mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCACAGCTTTATTGAACTG GTTCAAGAAAGCTGTGGAAGA TGCTGGCCTCTCTTTCCAGTTTCCCACAGCTTTATTGAACTGCATGCACCTGCTGATGCGGGTGGAGGAGTTGAAACTGCCGCTCCTCTGAAAGATGCAGTTCAAGAAAGCTGTGGAAGATCACAAAGAAGGCCATCT TTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAACTTCTCAAACTTACTTTTGGGGATGGACATAAACTAACGATGTAAAGCTTCTTGGAAAAAAAAAAAACCCATTATAAAAATGCTAAAAAAGGACCAATAATGAACTAAAAAACTTTAAGTTAACAATGGTAAAACTGTCAAAGCGTTCAGGAAAAGTAGGAGAGAGTGTACAAAAAAGTATGAAACTGAACCTTATTAGCTTATCACCAGCTGCTGGAGAATCGACAGAAAAAAAAACACATTTTGATCGGGGCTGCATGCATGTGGAAAATTTATATTTGTCTAGGCAGCACGCATGCATTTGCACAGGATGACCAAGTTGACGGCACCGGCCATGCTTTGCTGCTCTGCTGGCCTCTCTTTCCAGTTTCCCACAGCTTTATTGAACTGCATGCACCTGCTGATGCGGGTGGAGGAGTTGAAACTGCCGCTCCTCTGAAAGATGCAGTTCAAGAAAGCTGTGGAAGATCACAAAGAAGGCCATCTGATTACTGCAGGAGGAGGAAGGAAGGAGGAATAAGGAGAAGGAACACTGGTTGCTGCCTGCTGCCATCGTCTTTGG 2 0 5' arm Zea_mays mirnest MIR396 9e-18 zma-MIR396b 9e-64 -61.7 ...((((((.(((((...((((.((((((((((.(((((((((((..((((((....))))))((((((((..........)))))))).....))))))))))).)))))))))).))))...)))))))))))... (-61.7)