mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATCACAGTGGCTGTTCTTTTT AGGGAATAGTTGCTGTGCTGTA AGTAGAGGGAATAGTTGCTGTGCTGTAAGTTTATATACCGTATCTATATCACAGTGGCTGTTCTTTTTGTA 3 0 3' arm Drosophila_simulans mirbase mir-6 2e-26 dse-mir-6-1 4e-30 -25.7 ..(((((((((((((..(((((.((((..(...........)..)))).)))))..))))))))))))).. (-25.70)