mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTCCCACACCTCCCATCCC GATGGGTGAGTTGGGAAAATA GGAGAAGCATGAGAAGAAGACTGGACTGGGGGAAGTCTTGGAGATGGGTGAGTTGGGAAAATAATAACTTTCTTCACGAAAGAAAGCAATTTTTTTCCCACACCTCCCATCCCTAAGATTTTCTTCAGTTCCTTCCTCTCTTTACCTGCCTT GACACACAACAGGAGAAGCATGAGAAGAAGACTGGACTGGGGGAAGTCTTGGAGATGGGTGAGTTGGGAAAATAATAACTTTCTTCACGAAAGAAAGCAATTTTTTTCCCACACCTCCCATCCCTAAGATTTTCTTCAGTTCCTTCCTCTCTTTACCTGCCTTTCGCTACTGTTTTGGTAAGTTCACTGTTCTCTCCTTCTTCAAAGCCCCCTTTTTTTTCCTCATATATATATATATAGATATATTTAACACCAAGCGCTTTATAGGCTCAGATCTAGTATTAGATGGATGAAAAAGGTAGTCTATTTGATGATATATTATTTATTTTAAGTGATTAGCAATTGATGTGAGATCTAATCACATTAATATTTGTTTCCATGGGGTGTATATTTTTTTCCCCCCTTGAAATTAGAACATTATAAGCCTTAACTTTTGGTAAGGGTCTATCAATGAGTAATATAGAAAGGAGAAAATTGCTTGCTTTTTATAAACGTTATTTAATGTTAAAGCATGTATCATTGAAACTGGGAAAGGATCTCTTCTTCTCTTTGGAGGGGGCTGGAAATTTTCGCAAAGAATAGTTTTAGGAGGTTATCATTATAATATCGTCCGAGGGGTGTGACAGGAAATTTAGGGATGCACGAATTGCGGCAGCGGGAGAGATTATAGCGGGGGCGGAAAGATGTATGGGAGAAGAACAAGGCGGAAAAGAAGGAAACCAGCAGACGGACCGGGGGGCGGCGATGTATCGCGACGCGAGGAGGAGGACACCACCCGAGGCAGCGGCGCGCACCGTCACGGCGGCGACGCGGGCGCGAGAGCACGAGATGTGGGACAAGCAAGCGGGGGTGGAGCG 3 2 3' arm Citrus_reticulata mirnest 100 csi-MIR472 3e-33 -57.2 ((...((...((((.((((...(((((((((((((((((((.((((((...((((((((((.(((..(((((((.....)))))))..))).)))))))).))..)))))).))))))))))))))))))))))).)))).....)).)).. (-57.2)