mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGTTCGTTTGGCTTAAGTTA ACTTGGGCCAAGGGAATGCAAACT CCATCCGAATCCCTACCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACTAAAGCGCCACGTGG 3 2 3' arm Drosophila_simulans mirbase 100 dme-mir-375 2e-46 -37.09 ((((.((.........((((((..(((..((((((((((((.((..(((((((....((.....)).))))))))).))))))))))))....))).)))))).......))....)))) (-37.09)