mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAAGCTAGATTACCAAAGCAT GCTTTGGCGCTTTAGCTGTATG ACGCCGCACTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTGAATACTTCATAAAGCTAGATTACCAAAGCATTGGCTCTGTGGCCA 5 0 3' arm Drosophila_virilis mirbase mir-9 1e-25 dmo-mir-79 1e-34 -41.64 ..((((((..((((.((((((((...(((((((.(((((..............))))).)))))))...)))))))).))))..)))))).. (-41.64)