mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGGACCAGGCTTCATTCC AATGACGTCCGGTCCGAAC CGAGTCTGCGGTAGCTTCATGGCTGTCGAGGGGAATGACGTCCGGTCCGAACAAGCCACGGCTGCTGCTGCGCTACCGCCGCGGCTTCGGACCAGGCTTCATTCCCCACGATTCACCATGGAAACGGCAGCGAGC TGGCAGTTTCGCGCGTGCGTACATGACGTCCTCTTCCGTCCGGGTGGTTTGTTGTGCTCAGCTGCAGCGTCGTCGAGTCTGCGGTAGCTTCATGGCTGTCGAGGGGAATGACGTCCGGTCCGAACAAGCCACGGCTGCTGCTGCGCTACCGCCGCGGCTTCGGACCAGGCTTCATTCCCCACGATTCACCATGGAAACGGCAGCGAGCCGCGAGCTTCCAGTGCGCGCAGTGGTTTGATCAGCAAACACCTGCGCGGCCAAGGCTGAGCCTTGCAGGTCAGGCGTCCATGTTCTCGTCAGCAAGTCAGCGTCTTCTTCACATGTCTGAGGTCTGAACAATGGCGGGTGGACATCGATGGATGAGCATTGCCGCTGCAAGCAGATGAATACCTGCAAGGGAAGATCGTCCGGTTCACACTTGAGTTGAGATACCATGCACTACTCTTGCAGTCTTGTTGTAGTTAGATTAGATACCCATGCACTTGAACCGTGCAATAGCATAGCGAGGAAGACGAACCCAGAGAGGACTCAGAAAGAGATGTTCTCTATTCCATCCAGTGCTCATCTAGTCATCTAGTCTGCCCGCGGGTGTCTGCCATGAACGCTGACGCTGCTGCCGGAGCCCGGAGAGCTACTCTGCTACTGGTGTGGAGTGGACAAACAGGGAGGGAAGGCGTCTT 2 0 3' arm Zea_mays mirnest mir-166 0.0000001 zma-MIR166f 1e-38 -61.7 ...(.((((.((...(((((((..((((.(((((((((.(((.(((((((...((((.((((.((......))....)))).))))))))))).))).))))))))).))))...))))))).)).))))).... (-61.7)