mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTGCACATTCACCGGCCTGA GCGGACGGTATCTGCGTCAATATT TAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAA 5 2 3' arm Drosophila_yakuba mirbase 100 der-mir-311a 9e-38 -17.6 ..((((.(((((.((.((((...((.(.(((((((((.......))).))))))).))...)))).))))))).)))).. (-17.60)