mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGACAGAAGAGAGCGAGCAC GCTCGCTTCTCTTTCTGTCAGCC ATAGTCGATTGGGCTTAGGCCCCGAAGAGATTGACAGAAGAGAGCGAGCACCTGGCGCGGCGACCGGCATGGAACGCATGCCGTCCCCGCCGCGTGCTCGCTTCTCTTTCTGTCAGCCTCTCCCTCGTCCTGAGCCGACGCCGAT AGCGTCCTCTAGCTTCTTGCCCAGCCCGGGTAGTACAATACAACCCCCGTCCCATCAGCTGGCAGAGGCCAGGCCATCAGCACCCACACCCTCTCCCTCCGTTCCTCCTCCATCCTCCTGCCCCCAAGTACGGCCGCCGCCGCCGCTCACCGGATCCAAGAAGAACAGCCGAGGGGTTCGGTCTCCCTCCCAGCAGTGACGAGCTAGCTGCTCCGTGCGTTGATTGCGTGTTTGTTATTACGTGTACGTCGTGTACCGGCCGTGTTTAGCTGCAGAAAATATAGTCGATTGGGCTTAGGCCCCGAAGAGATTGACAGAAGAGAGCGAGCACCTGGCGCGGCGACCGGCATGGAACGCATGCCGTCCCCGCCGCGTGCTCGCTTCTCTTTCTGTCAGCCTCTCCCTCGTCCTGAGCCGACGCCGATCGAGCGTCGTGTGTGTAGCTAGCTATACCTTGCTCTGGGCAGCATCAGTCGCTGCCTGCCTAGTGGCTGCTGGCGCTAGTGGGGCGGCAGACGCCACCACCGATACTGGAAGGCAAGGAGGGAGAGAGGGAGGGGA 0 2 5' arm Zea_mays mirnest mir-156 5e-35 zma-MIR156k 2e-65 -71.7 ...((((....((((((((...(((((((.(((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))).)))).))))))))).))))...))).)))))))).....)))) (-71.7)