mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCCAAGCATGATTTGCCCG GGCAAATCATCTTGGCCATC GAGAGAGAGGCCTCGCATGGAGGTAGGAGGCCCATCTCTGATAGCCAAGCATGATTTGCCCGTAGTCTGACTCTGAGTGTGCTCCTGCTACGGGCAAATCATCTTGGCCATCTGAGTACCTCCCTACGCTGTCCCCATGTCAGGAGGCCC CACAAGCAGAGCACCAAGCGGCAGGCAGGAGAGAGAGGCCTCGCATGGAGGTAGGAGGCCCATCTCTGATAGCCAAGCATGATTTGCCCGTAGTCTGACTCTGAGTGTGCTCCTGCTACGGGCAAATCATCTTGGCCATCTGAGTACCTCCCTACGCTGTCCCCATGTCAGGAGGCCCTGCTCTTCTTCGGTCGGTTTTAAGGCCTGTTTGGAGAGGAGCCTACGGCGCCGCAGCCCGCCACACCTGCGGCGGCCGATTTGGGCGCCACACCCGCGGCAGCCGGAGTGTGGCGCGGTGTGGCGCCCGAGCCAGCCCACCAAACAGGCCCTTAGATAGCCAAAACGCAGTACACACAGCGCTGCTTACCTTGACGACGACCACTTGTGTTGGAGCAGCAGTCATCTACAGCCAAAACTCTTCACTTCCTTCGCCATTGCCGTGTTACCAGCCCAGCCAGCGACGTGGGCGTGCCGCGACAGGGTTTTTTTCCCCCTGGGAA 1 1 5' arm Zea_mays mirnest MIR169_5 0.0001 bdi-MIR169k 0.0000001 -62.5 ........((((((((((((.(((.(((((.....(((.(((.((((((.((((((((((((((((..((............))..)))))))))))))))))))))).))).)))..)))))....)))....))))))...)))))). (-62.5)