mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGAGCTGTCCTG GTGCAGCTCTCCTCTGGCATG GTGCGAATCACAGTGCAGCTCTCCTCTGGCATGAAGGCTGTGAGAGAGGCATGACAATTTCTGGCCTTGCCCTGCCAAAGGAGAGCTGTCCTGCCATTCATT AAGGAAACAGTGGAGGAAAAGGACGATCTGAACAAGCATCAGCAGCAGGCAGTCAAAGGAGGTCAAGAGATTGTAGCTCAGGGTGCGAATCACAGTGCAGCTCTCCTCTGGCATGAAGGCTGTGAGAGAGGCATGACAATTTCTGGCCTTGCCCTGCCAAAGGAGAGCTGTCCTGCCATTCATTAGCCCTGCAATCAGCATGCACATTGGTGTTTTCAGTGGATCATTGTTGAGTGTACTGAGCAAAGGTATATGCGTCCATGGATGTGTTTTGATATATAGAAATATTTGTGTGGATCTTTCTCGTTAGTGAACAATGCTTGTTCTTATTGTTTATAGTTCTTGAACAATAGCTCGTGTACCATCGCCAGCTGCACCAAGCAAAGGTGGCGGCATGAAACACAATCCTCGTCTCATCATTGGTGGCTTTCATTTTTTTTTTTTTCCAATTGATTGACCATTCATATAGAGGGATCGACATGGCTTTTGCTTTGTTGTAAGCGTCTGTGAAAAAACGAAATACAAGTTGAGCACGAGCTTGGGTCCAAAAAAAAAAAAAAAA 2 0 3' arm Zea_mays mirnest mir-399 6e-52 zma-MIR399b 4e-53 -42.5 ....((((..(((.(((((((((((.(((((....(((.......(((((..((.....))..)))))))).))))).))))))))))).)))..))))... (-42.5)