mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAACAACAAGAAGAAGAAGAA TTTCTTTTTCTCTTTTATTGTT CAATTTGTTTTTTCTTTTTCTCTTTTATTGTTTTTTTTTAAATTTACCATGTCCACAGATCTACAACTCTGCCAAGATTTACCAAAAATGTTCAAATCATCCCCACTCAAGATCCTGACACAACAACAAGAAGAAGAAGAAGCTGCTGGT CCACGCGTCCGCGGACGCGTGGGTTCTTTCCACTTCAGCTTCCCTTTTTCCATATAAATACTGATGGCTAACCTAGCTTCTTCTTATAATATATTCTTATATCTCTGGCTCTCAGCAACAATTTGTTTTTTCTTTTTCTCTTTTATTGTTTTTTTTTAAATTTACCATGTCCACAGATCTACAACTCTGCCAAGATTTACCAAAAATGTTCAAATCATCCCCACTCAAGATCCTGACACAACAACAAGAAGAAGAAGAAGCTGCTGGTGTCATAATTCAAAAAGAGGGTACTGAAACTGAATTATGCAAGACACCAACATCAGAGGAACACAAGATTCCTGAGATTTTGTGCTGTCCTAAAGCGCCAAAGAAACCTAAGACACGAAGCAGTACTGTTTCATGCAAAAGAAAGCGGGCAGCTGCTGGCTGTTGATGACTTTCAATTCTTTGCGATCCTCCACCGCCATGAAGTTGAAGACTTCTTAAAATCCCCTTCTCGACGGCAACCTGCCCTACCTCATCTCTCGTCTATCGTAATCGGACGCCGCTACCCCCCCCCACGGCCACTCCGGGTGCGCTGGCGGTCGTCCGCATCGCTCCACAATGCCCGACACATCCACGCTCTGACCCGTCGCCACAACGCCCCCACCCCCTCCAGAACGCACCACACCCAACCACCCGTGCGAAAGCGCCACGCCGGGCAGACCTGCCCACGCCCCGGGCGGTCGCGCCACTCTCCACGCTCGACCGCACGCCCCCGCGATACGACCGGACCCCGGCACCGACGCCCGGGCCAGCCACAGGACAAAGAGGCCCCCACCACGGCCCCCCCGAGCACGACTCGTGACCCACACCGGCCAAACCACGCGTCCCACGACGCGCAGCGCAGGAGCACGCAA 3 1 3' arm Citrus_reticulata mirnest 100 tae-MIR1134 0.00003 -16.9 ......(((((((((((((((...((.((((...................(((....(((((.............(((((.............)))))...........)))))..))))))).))..)))))))))))))))....... (-16.9)