mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGATGTCGAACTCTTGTAG GCGAGAGAATTTTTTAACATGGCGT CGTACAACAAAATTATTGCGAGAGAATTTTTTAACATGGCGTTTGCTTTACCAGGTCGATAGACTATCGTGATGTCGAACTCTTGTAGGACAATCTGGTATTT 3 5 3' arm Caenorhabditis_elegans mirbase 100 100 -21.05 .((((..........(((((((((.....((..((((.(((............((((....))))..))).))))..))))))))))).........)))).. (-21.05)