mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCTTTGTGGCTTTGCTGGTA ATAAGCATTTATGGCTACAATGTATA TATACGCTATCGAGATAATAAGCATTTATGGCTACAATGTATACGCCTCTCAAAATTACGTTCACATTGCTTTGTGGCTTTGCTGGTAACTCTTTTGCCTTTCACGCAAC 4 5 3' arm Caenorhabditis_elegans mirbase 100 100 -20.32 ...........(((.((...((((.....((((((((.(((.(((.............)))......))).)))))))).))))..)).)))..((((.......)))). (-20.32)