mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGATCATTAGTTGAAAGCCG GCTTTCGACATGATTCTAAAC GGACACTCTTTCGCTCAGCTTTCGACATGATTCTAAACAATACGTCGAGACAATGTTGTTGAGATCATTAGTTGAAAGCCGAACGATTTTGAGATATCCA 2 3 3' arm Caenorhabditis_remanei mirbase mir-80 9e-51 cbr-mir-80 7e-33 -32.5 (((..(((..(((.((.((((((((((((((.((.(((((((.((....))..))))))).)))))))..))))))))).)).)))....)))...))). (-32.50)