mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACAAAGTATTCGAAAAGGCGTGC CCGTCTTTCCAATATTTTGAAAC AGAAGACGTTCTGAAGTCGGAGCCCGTCTTTCCAATATTTTGAAACCAGTACTCATGCAAATGGTTACAAAGTATTCGAAAAGGCGTGCTCTGAGAAGAGCTCTTC 3 1 3' arm Caenorhabditis_remanei mirbase mir-85 1e-53 cel-mir-85 0.00000000009 -42.62 .(((((.(((((....(((((((.((((((((.(((((((((.(((((.............))))).))))))))).).))))))).)))))))..)))))))))) (-42.62)