mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTGCACTCGCCCCGGCCTG GGCCTTGGCCGAATGCATATATT ATGGATACAATCTGAAAATCAAGATCAGGCCTTGGCCGAATGCATATATTGCTCAGTTGAATTGCTAATATTGCACTCGCCCCGGCCTGATCTAAAAGTAAGATTTCAT 3 2 3' arm Caenorhabditis_remanei mirbase mir-235 8e-33 cel-mir-235 0.000001 -35.76 (((((....((((........((((((((((..(((.((.((((.(((((((...........)).))))))))).)))))..)))))))))).......))))))))) (-35.76)