mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACTAGAGACACATTCAGCT CTGGATGTGTGATCTTGGTCGTA GAGTCGCAGCCCCGCTCTGGATGTGTGATCTTGGTCGTATCCGCGCAAATGCTCAATGATTATGACTAGAGACACATTCAGCTTGGGGCCGGCTCT 3 2 3' arm Pristionchus_pacificus mirbase mir-44 1e-46 crm-mir-45 0.000000005 -45.9 ((((((..((((((..((((((((((..(((.(((((((((.(.((....)).)...)).)))))))))).))))))))))..)))))))))))). (-45.90)