mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AATGACAGAACAGTGCGCGAG CGTTCACTCTTCTCGTCAGTCG GGTACCTAGTCTTTTCTCTTTCCCGTTCACTCTTCTCGTCAGTCGATGATCGAATATAGAATGACAGAACAGTGCGCGAGAAGGAAGACTAGCTTCC 5 1 3' arm Pristionchus_pacificus mirbase mir-2238 6e-49 ppc-mir-2238a-3 4e-34 -33.3 ((...(((((((....((((((.(((.((((.((((.((((.(((.....)))........)))))))).)))).))).)))))))))))))...)) (-33.30)