mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCAGGGATTCTCAGTAGATT TCTTCTGAAATCTCTGTTTCGATC TACTCGCAACGTCCCTTATCTTCTGAAATCTCTGTTTCGATCACTAATTGGAGTGATCCCAGGGATTCTCAGTAGATTAGGGCATCGAGT 3 4 3' arm Pristionchus_pacificus mirbase mir-2241 4e-28 ppc-mir-2240c 3e-38 -36.9 .(((((....(.((((.((((.((((((((((((....(((((((......))))))).)))))))).)))).)))).)))))..))))) (-36.90)