mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCGCAAGGTTTCCTCAAGATC TCTTCAGGATCCCTGTCTGAACA GCTCTTTTCGATACGCCTCTGATCTTCAGGATCCCTGTCTGAACACAGAAATTGAGTGTTCGCAAGGTTTCCTCAAGATCAGGGCTTCGAGTCAGCT 5 1 3' arm Pristionchus_pacificus mirbase mir-2241 3e-35 ppc-mir-2241b-2 8e-48 -43.5 (((...(((((...(((.((((((((.((((..(((...(((((((.........)))))))..)))..)))).))))))))))).)))))..))). (-43.50)