mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAACTGAACCGAACTGAAGC TTTCNCTGGTGGAGTTTCAA GTATAGAACATGGAACTGAACCGAACTGAAGCCGAACTGCTTTACTNTGAATGGGGCTTTCNCTGGTGGAGTTTCAATGNGCTTT CNCCNNCNGNTTNGTCNNCNNNANANNCCNTNNNTTNNNNNNTCNTNCNANGGNNATNNGGNANNCNCCANNNTNGGGGGANGGNNCAANGNCNGGGCATCANAGGNNNCTNNANAGCCNTTNNTGGGGAAGCATCCCCCNNNTAAAANCCCAGTCTCNTNTTANTCTTGCATNGNTAGATTTGGANGCCGATTCAGTTTTNGNNGGCNGNNCCCAGCAAATCNTCTCAGTANANGNTTATTTCCANGGGAGATGGAGTCGCNCATCAAGCTTTGACTAATCNCTGTGCTGATCCTTTTCCCTGTTGGTGTGNACATNCCNTTTCTGNTGATCAGNTTCTCCNAATTTTTGGATCNATCATTCAAAACTGGGTNTTGGAAGAGAGGTATTTTGGAAGAGAGTTTTACCGCCCCCTCCTCGACTTATCGGNTGTGTTGCTGTCCATATGAATTGTATTTGAGGTGGNGCATATTGATCAGCTTGTAATGTCTTTTGTTAATTTTATTNTTCCCTTTCCCCNAATATGATGTATAGAACATGGAACTGAACCGAACTGAAGCCGAACTGCTTTACTNTGAATGGGGCTTTCNCTGGTGGAGTTTCAATGNGCTTTTNTTTTATGGAAAGTTATTTTTACATCNAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5 1 5' arm Citrus_sinensis mirnest 100 100 -16.3 ((.....)).(((((((..((((....((((((.....................))))))...))))..)))))))......... (-16.3)