mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGTCACTTGTGGTGTAGGCGA GTTTACTGACGAAAGGACGCAT GGCTTTTACCAACTTGCGTCACTTGTGGTGTAGGCGAGACATTCGTTTACTGACGAAAGGACGCATTTACTGTGCA 3 2 5' arm Schistosoma_japonicum mirbase 100 sja-mir-3485 8e-38 -21.61 .((...........((((((.(((.((..(((((((((...)))))))))...)).)))))))))........)). (-21.61)