mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGACGATCGTACATGTCTT TTCATGGGGCGGCGTATCCATAC CCTTATCGATTTCATGGGGCGGCGTATCCATACGTGATCTCTAGCTGTATATACTGGTCCTTGCAAGTGACGATCGTACATGTCTTGTTGATGAGC 5 5 3' arm Schistosoma_japonicum mirbase 100 100 -23.4 .(((((((((..((((..(((((((...(((..(..(...((((.........))))...)..)..)))))).)))).))))....))))))))). (-23.40)