mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGACAATGCTAGAAAGTCTT GACTTTATGGCATTGCCCACA GAATGCAGTACCGTAGTTACAATATAGGACTTCCTCCGTTTTCATATTGTAAGACTTTATGGCATTGCCCACATCTATATAAATGTGGACAATGCTAGAAAGTCTTATAATATGAAACGGAGGGGTTATTACATATGTAATTATATTACAATTAT TGAGGCGGCCGACATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGGATGACAAGTAATTTGTAATTTGAAAAGAATGCAGTACCGTAGTTACAATATAGGACTTCCTCCGTTTTCATATTGTAAGACTTTATGGCATTGCCCACATCTATATAAATGTGGACAATGCTAGAAAGTCTTATAATATGAAACGGAGGGGTTATTACATATGTAATTATATTACAATTATACCATAGTTAAATTTAAAAGTTTTTCTTTACGAGAACTTGCGACATGTTTTCAGCAATTCCCTTAAGGGGGGAAAAATGTTTGTTTTCCCAAGGAAATACTTGCTACTGAAAGCTGCTGAGCTTGCAACAATCATGCTCTCTTCGAGATCAGATCCTCAGGGAGTCGATGTACCTCTCTCCTCGAGAGAATTCTCCAAAGATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGAATTCCACGAATACACGGTAATCTTACGGGGGTTGGCAATAACCACGGAATTGGTTAGCGGACTTGATTACTAAACGAGATCAAAGGACCAATTGGCACCGCAAACCTTAAGTATCACCACATAGCAATATTCATTATAAATATCCAA 2 0 3' arm Oryza_sativa mirnest MIR1122 1e-26 osa-MIR819a 6e-19 -58.8 .......(((..(((((((((((.(((...(((((((((((.((((((((((((((((.((((((((.((((((........)))))).)))))))).)))))))))))))))))))))))))))...))).)).)))))))))..)))...... (-58.8)