mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATGGTTCAATGCTGNTGTGA GTGTTGGCATTGGTATANNGA TGGTGAACTCTCATGGTTCAATGCTGNTGTGAAGGTTGNCGTGNNGATTGGGCTTGGCATTTGTGTTGGCATTGGTATANNGAGTGGCTTG GAATTCCTTGCTCGACCCACGCGTCCGGAATTATCATCGCCTTGGTTTGATTTGAGAGTCTTTTATGTGAGGGTCAGTAATTTTCCGGTCGATGATTCAACCCCTGAGTTTCTCACTCTCAACCATATCCCCTTGAGCCATGACACCCTTTTAGAAGTGAATGGTGTTCGAAGTAGCATTTACTCTGATGGTGTCTCTTCACTTCTTAGAAGAGATAGGGTAGATAAGAAATCTGAAGAAGCCACATTCATAAGCACTGATAGTATTAGGTTGACAGGAAGTGTGAAATTTGAGGTGTTTGACAAAGAAGATCTCATTTTATCTGGGGTTCTGGAGATGTCTAATAGCAATGGTTTCACTGGGGAATCAAAAAAAAATGCGAAGCATTGGAGCATGAACTGTGAATCAGAGATCACTGCTGGCACTGGCTTTCTGAAGGGAAAGCATATTGCAGTTCCTGAATTACCATTGCCCACAATTGAGGTTTATGTTGCTGGCTCCTTCTCAGGAACACCTATCATCTTAACCAAGACTTTGCAGCTTAGTTTTCGAAAGAAGCATAACAGGAAGGGCATGTTGGATGCAATCCCAGAGTATGAGACAACTGAAAACAGAAAAAATGGATCATCAGGACTTGTTTGGCAGGTAGCTGAGTACAGAAACTACAAACCCGAAAATAATGAAGATTACAGCAGCATGTACTGGAGGACGCAATACATGGATGGTGAAGATGGTGAACTCTCATGGTTCAATGCTGNTGTGAAGGTTGNCGTGNNGATTGGGCTTGGCATTTGTGTTGGCATTGGTATANNGAGTGGCTTGCTGGTGCGTACTTACCATCTACTACTCCGAACTTCAGAAGGCGGCTTTTGTGATCCACTCATCTAAGCTGNTAACGCACTGGNTCTTGCACATCCCAGAGCAGCTAACTTTGNCTTGTTATGA 5 0 5' arm Citrus_sinensis mirnest 100 100 -23.2 .(((..((((...((..(((((((((.((((((.((((..((.........)).)))).)))))).)))))))))..))..)))).))).. (-23.2)