mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AACTGAGATACATCGCAATCG TCCACGTTCG ACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTTCCATGTTCCAGACGCAGGCCTTCGCCGAACTGAGATACATCGCAATCGACACACCGGCCGCTTCAGAATCAGTGACTAGCATACCCAGCTGCTATTGG 13 99 3' arm Physcomitrella_patens mirbase 100 ppt-MIR2083 2e-75 -51.42 ..((..((((((.....))))))..)).....(((((((.....((((((.((.(((......((((((.......(((((...(..((((.((((((.....................)))))))).))..)....)))))......)))))).((......))......))).)).)))))).....)))))))....(((((........))))).... (-51.42)