mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACCGTTAGATCGAGAAATAAA TATTATTTAATCTAACGGTAG ACCATATATGTTGTGGAAACTACCGTTAGATCGAGAAATAAATGTTCGAGAATCATCCACGTTATCACGCACAGTAAAATTTTTACTCACGAGTAAATCTGTGAGTAAAATTTTTACTCGTGATGACGTGAACAAATCTCAAGCGTCTATTATTTAATCTAACGGTAGTTTTCAAGTTTCCATCGT GATCAGAGAAGGGCCCAATTCGAGGTGGCCCACATAACCTATCACAGGCCCACGACCCATGACGGTCCACTGTTATTGCTCCATCGATGGCGCACACGCCAAAACGGAAGAAAATATACAGTGGACCATATATGTTGTGGAAACTACCGTTAGATCGAGAAATAAATGTTCGAGAATCATCCACGTTATCACGCACAGTAAAATTTTTACTCACGAGTAAATCTGTGAGTAAAATTTTTACTCGTGATGACGTGAACAAATCTCAAGCGTCTATTATTTAATCTAACGGTAGTTTTCAAGTTTCCATCGTGTACGTGGTTTCCACCCCCATATTTTCCCCAAAACGGCGCACACCAAACGCCTCTCCTTGCACGGTTACACACAATGACACGCAAGCACGTTGACACGAAGGCTACATAGCTAGGAGCCTAGGACGACGCAGCGGCGGCGGCGGCAGCGTGCATTGTGCCGGCGACGTCGACGACGAAGCGGTACCTCACGTCGTTCCTCTCGAGGCGGCCGAGGGCGGCGTTGACGGCGTCCATGGCGACCACCTCGACGTCCGCGGCGATGCCGTGCTCGCCGGCGAAGTCCAGCATCGCCTGGCACTCGGCCACGCTGCCCACGCCGTTCCCGGCGACGCGCTTCCCGCCCTCGATGATGGCGTACGCGGGCAGCTGCAGCGGCATCGCCGGCGCGCCCACCACCACCATCTGCCCCTTGGGCTTCAGCAGCGACAGCAGCGGCACCAGCGGGTGCCCCGCGGACACCGTGTCGATGATCCCGTCCATCGTCGCCGCCGCCGCCG 3 0 5' arm Oryza_sativa mirnest MIR811 2e-22 osa-MIR2862 3e-21 -70.1 .............((((((((((((((((((.(((.((((.(((((.((((......((((((((((((...(((((((.((((((((((((.....)).)))))))))).)))))))))))))))))))......)))).))))).)))).))).))))))))))))))))))............ (-70.1)