mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGAAGTGTTTGGGGGAACTC GTTCCTCTGAGCACTTCATTG ATGTTTTCTAGAGTTCCTCTGAGCACTTCATTGGAGATACAATTTTTTATAAAATAGTTTTCTACTGAAGTGTTTGGGGGAACTCCCGGGCTGAT 3 0 3' arm Arabidopsis_thaliana mirbase mir-395 9e-48 aly-MIR395e 2e-33 -39.5 ......(((.(((((((((..(((((((((.((((((.((.(((((....))))).)))))))).)))))))))..)))))))))..)))..... (-39.50)