mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAG CTCTGTATTCTTCCACAGCTTTCTTGAACTGCAAAACTTCTTCAGATTTTTTTTTTTTTCTTTTGATATCTCTTACGCATAAAATAGTGATTTTCTTCATATCTCTGCTCGATTGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGAC 1 0 5' arm Arabidopsis_thaliana mirbase MIR396 1e-57 aly-MIR396a 4e-35 -51.4 .(((((((..((((((((((((.((((((((((((.(.((..((((............((....))....................((((......))))...))))...))..).)))))))))))).))))))))))))..))))))). (-51.40)