mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAGAATGGGAGAGAGTGCGT GCAATCTCCCCTGCTCGCC AGGACCTCCTCTGATGCTGAACGCAATCTCCCCTGCTCGCCGGCGCGTGGGCGTGAAGCACCCGGGTGGTGAATGCGTTACGCGTTGGGAATACACTTCCCGCTTATGCCGCGGAGGCTGCCAAAGATGCGAGGGTGGAACGTGGGCGTCTCATGGGGAGTGGGGGGACGCGGGGGGAAGAATCCGAAAGAGAATGGGAGAGAGTGCGTGGCCGGGGGTCCCGGCGGC CCACGCGTCCGCTCATTCCCTCCCTGAATATCATGATAGTCTTGGCCAATGGTCTTCCATACGATTCCCCTACCACTATTGCAGACATAGCCAACAGTGTTGGTACCAAAATTAAGGATGGACTTGACAGGAGAGCAGATTCGTGGAGTAAGTTCGAATGGGCACCTGATGGAACCTACTGGAGGGGTATTGGGATCTCCTAGAGGTGGAAGCTACTCCCTATCGGGAACTCCTGATGGTTGGACTAACTCCCATTCGCATCAGGAGCATCCTTCAAGTCCCATGGTCTGGGCAAATTCCCCATCGTTTCTCAGTGGTCTGCATGCTCGTCGGGGCGCTCGCGTGCCTGGATTGCCTAGAGGACCTCCTCTGATGCTGAACGCAATCTCCCCTGCTCGCCGGCGCGTGGGCGTGAAGCACCCGGGTGGTGAATGCGTTACGCGTTGGGAATACACTTCCCGCTTATGCCGCGGAGGCTGCCAAAGATGCGAGGGTGGAACGTGGGCGTCTCATGGGGAGTGGGGGGACGCGGGGGGAAGAATCCGAAAGAGAATGGGAGAGAGTGCGTGGCCGGGGGTCCCGGCGGCCTGGGGGGGGAGCGGGGGCGTGGGCGTGGACGCGCCGGCGAGGCAAAGGGGGGGACGATGGGTAGAAAAAATAGCAGCTATATGAAGGAAAGGAGGGGGGATGAGATGAGAGCGTAGCAAGAAGGGAGGTAGAGTTGTTGGGGGCGTGGTGGGGCTCGGGGAGCGGTAGGATGACGAGCCCGCGCCGGGAGGGGGCTGCCTTACTAAGCGGGGTGGCGGCGGGAGTGGGGGGCGACTGTCGGCGGCGCAAGGGCGCTCATTGGCA 4 2 3' arm Citrus_sinensis mirnest 100 100 -85.2 .((((((((......(((..(((((.(((((((..(((.(((((((((((((((....((((.....)))).)))).))))))))))).......((((((((((...(((..(((((.(((.....(((....))).......)))))))).))).))))))))))...((((........))))...)))...))).)))).)))))))).))))))))....... (-85.2)