mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATAGTTTCTCTTGTTCTGCAC GCAGAAACTGGAACTATTC GATCCATAGTTTCTCTTGTTCTGCACATCCACTAACTTCAGGAACCATGTCCCAGTTTCAGGTTAGATCAAGTGGGAAAACAAATGGAAGATTGTGGCTATGCAGAAACTGGAACTATTCGTC 4 2 5' arm Arabidopsis_thaliana mirbase 100 100 -36.11 (((..((((((((.....(((((((...((((...((((..........(((((.((((......))..)).))))).........))))...))))...)))))))...))))))))..))) (-36.11)