mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAAGGGCCTTTCTAGAGCAC GCTGTAGAAAGTCCCTTCACC TATTCTTTCATGTGCTGTAGAAAGTCCCTTCACCCTCGGAAACGTCACCATGGACTGGAACTGGGAGCGAAGAAAGCGAGATCTGATGGTTGGCATTTGAAGTGGCAAGCTGCAGAAAAAAGATGACGTTTTCAAAGTTGAAGGGCCTTTCTAGAGCACTGGGATCCAT CCACGCGTCCGGGAAAATATATTTGTTTATAATTTGAAGTTTGTATTTTTTTTTTTTTGGAAGTAATTTCAGTTTTGAATTACGTTTCAATAATTGTTTTGAAGCAAAATAATTTTGAAATGTTAAAATCTTGTAATTGTATTCAATTTTGTGTGTGTGTACATTCAAAGTATGTTTTTCTCTTCTGATTCTCATAAAATTTGGGTTGCTTTTATGTCATTTCTTAGCTAGATCTACACTCTCTGTGTTATGGGTGCAGGGTGAAGACGGTAGGGACGAAGAAAGAGGATGCCAACGGTTTGGATTCAAGGTGACGAGTTCCTTATGAGTTATGATGAGAAAGCTGAATAAAGAGACAAGATCTCCAGGAAATTCACTACTGGATGAAACGAGGGTTCTAACTCGAGGAAAGAGGATCTGATGCGGACGGTTTGGATTCAAGGTGACGAGTTCCTTATGATGAGCAAGCTGAAGAAAGAGGCAAGATCTCGAGGAAATTCAGCAATGGATGAAGCGAGGGTTCTAACTCTCACTTTCAAAAAAGCTTATGCATATTCTTTCATGTGCTGTAGAAAGTCCCTTCACCCTCGGAAACGTCACCATGGACTGGAACTGGGAGCGAAGAAAGCGAGATCTGATGGTTGGCATTTGAAGTGGCAAGCTGCAGAAAAAAGATGACGTTTTCAAAGTTGAAGGGCCTTTCTAGAGCACTGGGATCCATTCATATATAAGCTTTGAATCCCAAAAACCAAGGCTTTTTGTGCATATTTGCATAGACTTTGCAGTAAAATTACCTTTATTTTCCCTTTTTACTTGAATCAATAAACATTCCAATGTTAAGCATACTTTTGGGCAACAATAGTAGACCTGGATTAGGCTGCAAACAGGTTTCTGCAAAACGGGGGGAATTTTTTTTTACA 2 0 3' arm Citrus_sinensis mirnest 100 csi-MIR3952 4e-48 -46.7 ...((((....(((((.(((((((.(((((((.....(((((((((((((.....)))..((....((.......)).)).((((.(((((.((..........)).))))))))).......)))))))))).....))))))).))))))).))))).))))..... (-46.7)