mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGATTTGCCCTG GGGAAAATCTCTTTTGGCAGA GTTCTGCTGTTGAGGAATGATAGGGAAAATCTCTTTTGGCAGAGAGGAGTAAAAATCTTAAACAGGAATGTTTCTGGTTTGCCAAAGGAGATTTGCCCTGCCATTTTTGACAGCTATTG 1 0 3' arm Medicago_truncatula mirbase mir-399 1e-50 mtr-MIR399h 0.000000000000007 -50.4 .....(((((..((.((((.(((((.(((((((((((((((((..((((......((((....))))....))))..))))))))))))))))).))))).))))))..)))))..... (-50.40)