mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAG CTTCGTATTCTTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCATTGTCGTTGATGGTGTTGCATACATACGAGTACGTTGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAAC 1 0 5' arm Gossypium_hirsutum mirbase MIR396 0.0000000000005 ghr-MIR396a 1e-65 -50.8 ....((((..((((((((((((.((((((((((((...(((((.((.((....)).......(((..((...))..)))............)).))))).)))))))))))).))))))))))))..)))).... (-50.80)