mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCTGGCTCCCTGGATGCCA GCATCAGAGGAGTCAAGCAGG AAAAGGGTCACGTCCTGATCTGCCTGGCTCCCTGGATGCCAACTAAGGATGCTGTCGACAAGGATTGGCCCTTCCTAGTTGGCATCAGAGGAGTCAAGCAGGTCCAAAATTAGACAGATT 1 2 5' arm Theobroma_cacao mirbase mir-160 0.000000002 ptc-MIR160g 0.000000000000007 -52.06 ......(((.......(((((((.((((((((((.((((((((((.(((.((((((......)).))))...)))))))))))))))).))))))).)))))))........)))..... (-52.06)