mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGTTCTCAGGTCGCCCCTG GGGGCGAGCTGGGAACACACG GGAACGCGAGGGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCTCTGGTTGAT GTATTACAAGCTGTACTCTTGGCTTCGGGCAAAGCCAGTGTAGTACGTACTTCACGTACTCCGAGTCTTTTCCCAGCGATGGAGCAGGAAAAAGTACGACGCCAATCGATGCCATCCTCCTCCCGACCCCGTGGAAAAGAGTCTATAATACGTGAGCGCTTTGCCTGCGATTTGGCCAGGCAAACGCAGCCTCCATCATTAATCCGGTCATCAGCAAAGGTTAATTAGGCCCGGAGATTTTTGCATCTGACAGCGGGGAGGGAACGAATCGGAATCGGCATCGTTATCGGCATCGGCAGCGGCGATGGAGACAGAGAGATGGAACGCGAGGGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCTCTGGTTGATTATGAATATGTTGATTATTTTCTCTTGCCAAAAGGTCTCCTAAATGGCGCGGTGTACAAATGATTGAGAGGACCAAAAAGGGAGAGGATTTGCGCGGGCTGGATTTGGACTGAAGGACATCACAACTTGTGACAACTGCCACGACTTCATACAAACTCCATTTTGGGCATGTAAGTACGAATGGATCCATCCTCATGTCCATATCTATTCTGGAGAGTCTGCAATCATCATTTTACTACAAGAGACTTTTTTATGTCCACGGTGCTACGTCACCTTATTTGGGTCGAATATGATGCGTACCAAGTTGAGTCCGTTAGAGACACGCCTTATAGTTAGAGGACAACCCCAACTCATTCTCCACCTATATATTTCCC 1 0 3' arm Oryza_sativa mirnest MIR398 1e-43 osa-MIR398b 8e-45 -60.3 .....((.((((((((((..(((((((((.((((((((((((((.(((.(((...))).)))..)))))))))))))).)))))))))..)))))))))).)).... (-60.3)