mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGATTGAGCCGCGCCAATATC TGTTGGTGAGGTTCAATCTGA ATTTGGATTAAGATGAAGGCGATGTTGGTGAGGTTCAATCTGAAGATGGGCGTATGCGAGAAGCATAGGAATTCATTTCAGATTGAGCCGCGCCAATATCACTTTCTTTACAATGGGTTT 1 0 3' arm Theobroma_cacao mirbase MIR171_1 0.00000003 ptc-MIR171c 0.0000000004 -51.7 ..............(((((.((((((((((.((((((((((((.(((((.(.(((((.....))))).)...))))))))))))))))).)))))))))).))))).............. (-51.70)