mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAATCCTGATGATGCTGCAT GTGGCATCATCAAGATTCACA GGAGCAGTCGTTGTTTGCAAATGTGGCATCATCAAGATTCACATGCAACGTACATATATATTTATATATATTATATGGTTTTGGCCTGAGAATCCTGATGATGCTGCATTGGCAATGAATGGCTAGATG 4 0 3' arm Theobroma_cacao mirbase mir-172 0.000002 gma-MIR172b 0.00000000003 -50 .....(((((((..((((.((((..(((((((((.(((((.((.((......(((((((((......))).))))))......)).)).))))).)))))))))..)))).))))..)))))))..... (-50.00)