mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGATTTGCCCGG GGGCAAGATTTCCATTGGCAGG TTCAGGGTGCAACTGCATTACAGGGCAAGATTTCCATTGGCAGGCAGCCACTTATATGTGCACCCAAACTCATTCATTCATGTGGTGTGCCCTCTGCCAAAGGAGATTTGCCCGGCAATTCTTTTGTACTACTTA 2 1 3' arm Theobroma_cacao mirbase mir-399 0.000000000000002 vvi-MIR399e 1e-16 -47.85 .....(((((((..(.(((.(.(((((.(((((((.((((((((..((((((.(((((....................))))))))).))..)))))))).)))))))))))).).))).)..)))))))..... (-47.85)