mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGATTTGCCCCG GGGCAAATCTCCTTTGGAAGT AAAGATGCATGGATGCATTACAGGGCAAATCTCCTTTGGAAGTCAGCTGAACTCGAGGCATGGGAGATAAGCTCACTGCCAAAGGAGATTTGCCCCGCAATTCAGCCATGCTAAACC 2 0 3' arm Theobroma_cacao mirbase mir-399 0.0000000000001 vvi-MIR399g 0.0000000000004 -55.3 ......((((((.((.(((.(.(((((((((((((((((.(((.((((...(((.........)))...)))).))).))))))))))))))))).).))).)).))))))...... (-55.30)