mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTAGATTCACGCACAAACTCG AGTTTGTGCCTGGATCAGACG AGTAGATGGGACACATCTCCAGTTTGTGCCTGGATCAGACGCCATCAAGGCCGTCAATTTTTCAATCATGCCATCGATGGTGTTAGATTCACGCACAAACTCGTGATCTGTCTCCTCTTGGAA 3 0 3' arm Theobroma_cacao mirbase MIR403 0.0000000000005 rco-MIR403b 0.00000000003 -50.97 ...(((.((((((.(((.(.(((((((((.((((((.(((((((((..(((..................)))...))))))))).)))))).))))))))).).))).)))))).)))..... (-50.97)