mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGATTTGCCCGG TGCATGCAGTTGCATATTACAGGGCAACATCTCCATTGGCAGG CATTGAGGTGCATGCATGCAGTTGCATATTACAGGGCAACATCTCCATTGGCAGGCTGCATACTTATTACATCCATCTCATATATACGTATGTTCTTCAGTCAGTGTGCCTTCTGCCAAAGGAGATTTGCCCGGCAATTCCTCTGCATTTATTTT 2 1 3' arm Citrus_sinensis mirbase mir-399 0.00000000001 tcc-MIR399d 0.0000000000005 -55.19 ....(((((((.((((......)))).......((((((.((((((.((((((((..(((((((.(((..........(((((....)))))......))).)))))))..)))))))).)))))))))))).)))...))))............ (-55.19)