mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGGACCAGGCTTCATTCCCC GGAATGCTGTCTGATTCGAGA ACACAGTTGAGGGGAATGCTGTCTGATTCGAGACCATTCACTTTAAGCACACATTCATCTTTCGAATGATCTCGGACCAGGCTTCATTCCCCCCAACTCAA 3 0 3' arm Populus_trichocarpa mirbase mir-166 6e-46 ptc-MIR166g 7e-33 -41.66 ....(((((.((((((((..(((((.(((((((.(((((........................))))).))))))).)))))..)))))))).)))))... (-41.66)