mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGCCAAGAATGATTTGCCGG GGCAAGTTGTTCTTGGCTACA TAGTAGAATGCAGCCAAGAATGATTTGCCGGCGCCGGCCAGCACTTGTTGCAAAGCAACTAAGCAAGGGCTTCAAATGTTTTTGGCACCCCGGCAAGTTGTTCTTGGCTACATTTGGA 3 0 5' arm Populus_trichocarpa mirbase MIR169_2 2e-61 vvi-MIR169d 0.00000009 -52.1 .....(((((.(((((((((..(((((((((.(((((((....((((((((...))))).)))....))))............)))...)))))))))..))))))))).)))))... (-52.10)