mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGATTGAGCCGCGCCAATATC TGTTGGTGAGGTTCAATCCGA AAAAGAAAGCGATGTTGGTGAGGTTCAATCCGAAGACAGATTTACACGAGTGAAAGTAAAATCCGATCTCAGATTGAGCCGCGCCAATATCACTTTTCAG 2 0 3' arm Populus_trichocarpa mirbase MIR171_1 1e-43 ptc-MIR171c 6e-30 -38.1 ....(((((.((((((((((.(((((((((.((.(((.(((((..((........)).))))).).)))).))))))))).)))))))))).)))))... (-38.10)