mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGAGCCGAATCAATATCACT TGGTATTGATCCGGCTCTTC GAAGCAGACATGGCGTGGTATTGATCCGGCTCTTCTTCTGTATTTGCATCAGAAGTTTTTCGCTGAAGACGAGCCGAATCAATATCACTCTTGTACGCTTC 3 0 3' arm Populus_trichocarpa mirbase MIR171_2 2e-51 ptc-MIR171m 8e-48 -42.6 (((((..(((.((.(((((((((((.((((((.(((((.((....((.......)).....)).))))).)))))).))))))))))).)))))..))))) (-42.60)