mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCAGGTTATAAGACTTTCTAG AGAAAGTCTTATAACCTGAAA TTGACTTCTACTAGTTACTTCCTCTGTTTCAGGTTATAAGACTTTCTAGCATTGCCCACATTCATATGCTAGAAAGTCTTATAACCTGAAATGGTGGTAGTATATAATAAAATAAT AATTTTAAATTGACTTCTACTAGTTACTTCCTCTGTTTCAGGTTATAAGACTTTCTAGCATTGCCCACATTCATATGCTAGAAAGTCTTATAACCTGAAATGGTGGTAGTATATAATAAAATAATAAATTTTAAAATAGTAAATTTGACTGCTACTAATATATTACTCCCTCCGTCCCATCATATAGATGATTTTGGAGGGATATGACATATTCTAGATTACATCCGACAAACAGCCATGCCATTAGATAGATCCGCTCTGAGTTATAGGATGAGATCTGCTTGGTCTTGTTAAGGCGATTGAGAGGAAGAAGAGGGAATTTTTGCGAAAAAAAGAATGAATCTCTTTATTTATAGGGAACAA 0 0 5' arm Oryza_sativa mirnest MIR1122 1e-16 osa-MIR819d 7e-21 -45.8 ........((.((..((((.((.(((((((((((((((((((((((((((((.............))))))))))))))))))))))))))))).)).))))..)).))....... (-45.8)