mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGAGCTGCCCTG GTGCAGCTCTCCTCTGGCATG TAGCTCAGGGTGAGAATCACAGTGCAGCTCTCCTCTGGCATGAAGGCTGAGAGAGTCATGAGCAGTTTTCTGGCCTTTCCCTGCCAAAGGAGAGCTGCCCTGCCATTCATTAGCCCTGCAA 2 0 3' arm Sorghum_bicolor mirbase mir-399 2e-52 zma-MIR399b 4e-38 -59.5 .....((((((..((((..(((.(((((((((((.(((((.(((((((.((((((.(.......))))))))))))))...))))).))))))))))).)))..))))....))))))... (-59.50)