mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGGACATTTTTTGTGGCCTG TGCCACAAACAATGTCCCTTT TAAAGTGAAAAAGGACATTTTTTGTGGCCTGTGTAAAAAAGACAATTTTCGACGCTTAATTACAACTATTCACGAGGCATTTTTTTATCTTTTTATACATGCCACAAACAATGTCCCTTTTCACCGAA 3 0 5' arm Triticum_aestivum mirbase 100 100 -41.33 ....(((((((.(((((((.((((((((.((((((((((.((......))...((((.................))))...........)))))))))).)))))))).))))))).))))))).... (-41.33)