mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGGCATTCTGTCCACCTCC AGGTGGGCATACTGCCAATG GGCGCTTACTGAAGAGTTCCTTGGCATTCTGTCCACCTCCTCTCGCCGATCTTGCAGAAAGTTTACCAGTTCTGTTGCATTTTTTTTGGAGGTGGGCATACTGCCAATGGAGCTGTGTAGGCCTCC 2 0 5' arm Zea_mays mirbase MIR394 1e-38 zma-MIR394b 0.000000000000002 -50.61 ((.((((((...(.((((((((((((.(.(((((((((((.............((((((.(....)...))))))............))))))))))).).)))))).)))))).))))))))).. (-50.61)